PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3975310.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 269aa    MW: 30024.5 Da    PI: 6.5173
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3975310.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-183483255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Lj1g3v3975310.1 34 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 83
                     799******.7*********32...35**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.5853491IPR001471AP2/ERF domain
PfamPF008475.2E-133483IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-283491IPR001471AP2/ERF domain
SMARTSM003801.6E-353497IPR001471AP2/ERF domain
CDDcd000182.95E-323490No hitNo description
SuperFamilySSF541713.14E-193491IPR016177DNA-binding domain
PRINTSPR003679.0E-83546IPR001471AP2/ERF domain
PRINTSPR003679.0E-85773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MEIQFQQPNL QQHQKAGTKG GKFKGRNRNS NTNKFVGVRQ RPSGRWVAEI KDTTQKIRMW  60
LGTFETAEEA ARAYDEAACL LRGSNTRTNF ITHVSLDSPL ASRIRNLLNN KKGNKKQEGV  120
VDVGVDVDVP APSASTTSTS SNTSNSDKND HNSLSSGKVQ NTMLFDDAYK PDLSNCKEDF  180
QSCPPQSNFS WGFGPVFDRF PIAQILDMPK TDGMIDAASL ELSEFERMKV ERQISASLYA  240
INGVHEYMET VQDSNETLWD LPPLCSLFC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0066770.0AP006677.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT46E19, TM0371b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161956.11e-139hypothetical protein PHAVU_001G111800g
TrEMBLA2Q5W11e-142A2Q5W1_MEDTR; ERF transcription factor
STRINGGLYMA19G29000.11e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-27related to AP2 11